This directory contains supplementary material and data for the paper:
S. Mahony, P.E. Auron, P.V. Benos, "Inferring protein-DNA dependencies using motif alignments and mutual information", Bioinformatics (Proc ISMB), (2007) 23:i297-i304.
A copy of the paper can be found here
The supplementary material included here is the amino acid and the DNA motif sequences for the C2H2 zinc finger, homeodomain and bHLH proteins we used in the paper. Please refer to file README.txt for a detailed description of the datasets.